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atelier_15-17_octobre [2012/10/17 09:03]
johan [Draft agenda]
atelier_15-17_octobre [2013/06/10 11:08] (current)
johan [Thematic working days, October 15-17, 2012]
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 ====== Thematic working days, October 15-17, 2012 ====== ====== Thematic working days, October 15-17, 2012 ======
  
-Due to the increasing on-line availability of various biomedical data sources, the ability to federate heterogeneous and distributed data sources becomes critical to support multi-centric studies and translational research in medicine. The [[http://​credible.i3s.unice.fr|CrEDIBLE project]] ​organizes ​3 thematic working days in October 15-17 in Sophia Antipolis (France) where experts ​are invited to present their latest work and discuss their approaches. The aim is to gather scientists from all disciplines involved in the **set up of distributed and heterogeneous medical image data sharing systems**, to provide an overview of this broad and complex area, to assess the state-of-the-art methods and technologies addressing it, and to discuss the open scientific questions it raises.+Due to the increasing on-line availability of various biomedical data sources, the ability to federate heterogeneous and distributed data sources becomes critical to support multi-centric studies and translational research in medicine. The [[http://​credible.i3s.unice.fr|CrEDIBLE project]] ​organized ​3 thematic working days in October 15-17 2012 in Sophia Antipolis (France) where experts ​were invited to present their latest work and discuss their approaches. The aim was to gather scientists from all disciplines involved in the **set up of distributed and heterogeneous medical image data sharing systems**, to provide an overview of this broad and complex area, to assess the state-of-the-art methods and technologies addressing it, and to discuss the open scientific questions it raises.
  
 The methods for biomedical data distribution considered in the context of CrEDIBLE are: The methods for biomedical data distribution considered in the context of CrEDIBLE are:
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   * **Data flow**: the use and the enrichment of the federated data stores through the use of data processing pipelines.   * **Data flow**: the use and the enrichment of the federated data stores through the use of data processing pipelines.
  
-==== Draft agenda ​====+==== Agenda ​====
   - **Monday, October 15**   - **Monday, October 15**
     * 12:00 - Lunch     * 12:00 - Lunch
-    * 14:00 - J. Montagnat (CNRS) - Welcome, CrEDIBLE project presentation,​ feedback from the NeuroLOG project +    * 14:00 - J. Montagnat (CNRS) - Welcome, CrEDIBLE project presentation, ​{{:​00_neurolog-credible_121015.pdf|feedback from the NeuroLOG project}} 
-    * 14:30 - **[[atelier_15-17_octobre&#​data_integration|Session 1: Data integration methods and tools]]** (moderators:​ Johan Montagnat, Olivier Corby)+    ​* **14:30 - [[atelier_15-17_octobre&#​data_integration|Session 1: Data integration methods and tools]]** (moderators:​ Johan Montagnat, Olivier Corby)
       * Medical data integration       * Medical data integration
-        * 14:30 - C. Daniel (APHP / INSERM, Paris) - Electronic Health Records for Clinical Research+        * 14:30 - C. Daniel (APHP / INSERM, Paris) - {{:​11_20121015_daniel_credible.pdf|Electronic Health Records for Clinical Research}}
         * 15:10 - S. Murphy (Massachusetts General Hospital / Harvard Medical School) - {{:​12_murphy_credible_10-15-2012.pdf|Instrumenting the Health Care Enterprise for Discovery Research}}         * 15:10 - S. Murphy (Massachusetts General Hospital / Harvard Medical School) - {{:​12_murphy_credible_10-15-2012.pdf|Instrumenting the Health Care Enterprise for Discovery Research}}
       * 16:00 - coffee break       * 16:00 - coffee break
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     * 19:30 - Diner     * 19:30 - Diner
   - **Tuesday, October 16**   - **Tuesday, October 16**
-    * 8:00 - [[atelier_15-17_octobre&#​ontologies|Session 2: Ontologies, semantic modeling]] (moderators:​ Bernard Gibaud, Gilles Kassel) +    ​* **8:00 - [[atelier_15-17_octobre&#​ontologies|Session 2: Ontologies, semantic modeling]]** (moderators:​ Bernard Gibaud, Gilles Kassel) 
-      * 8:00 - C. Masolo (Laboratory for Applied Ontology, Trento) - DOLCE extensions +      * 8:00 - C. Masolo (Laboratory for Applied Ontology, Trento) - {{:​21_masolo-credible.pdf|DOLCE extensions}} 
-      * 9:00 - G. Gkoutos (U. Cambridge) - From Systems Genetics to Translational Medicine+      * 9:00 - G. Gkoutos (U. Cambridge) - {{:​22_gkoutos.pdf|From Systems Genetics to Translational Medicine}}
       * 9:40 - Coffee break       * 9:40 - Coffee break
-      * 10:00 - J. Charlet (APHP / INSERM, Paris) - Relations between Ontologies and Knowledge Structure: Two Case Study +      * 10:00 - J. Charlet (APHP / INSERM, Paris) - {{:​23_charlet-credible2012.pdf|Relations between Ontologies and Knowledge Structure: Two Case Study}} 
-      * 10:40 - P. Grenon (European Bioinformatics Institute) - Ontology for biomedical models and data +      * 10:40 - P. Grenon (European Bioinformatics Institute) - {{:​24_credible-grenon-2.pdf|Ontology for biomedical models and data}} 
-      * 11:10 - B. Batrancourt (APHP / INSERM, Paris) - Ontology reuse, from NeuroLOG to CATI+      * 11:10 - B. Batrancourt (APHP / INSERM, Paris) - {{:​25_credible_batrancourt.pdf|Ontology reuse, from NeuroLOG to CATI}}
     * 12:00 - Lunch      * 12:00 - Lunch 
-    * 13:00 - [[atelier_15-17_octobre&#​data_representation_models_and_reasoning|Session 3: Data representation model and reasoning]] (moderators:​ Catherine Faron-Zucker,​ Olivier Corby) +    ​* **13:00 - [[atelier_15-17_octobre&#​data_representation_models_and_reasoning|Session 3: Data representation model and reasoning]]** (moderators:​ Catherine Faron-Zucker,​ Olivier Corby) 
-      * 13:00 - M.-A. Aufaure (Ecole Centrale de Paris) - Crunch and Manage Graph Data: the survival kit +      * 13:00 - M.-A. Aufaure (Ecole Centrale de Paris) - {{:​31_seminaire-credible-aufaure.pdf|Crunch and Manage Graph Data: the survival kit}} 
-      * 13:30 - C. Raissi (INRIA, Nancy) - Knowledge Discovery guided by Domain Knowledge in the Big Data Era +      * 13:30 - C. Raissi (INRIA, Nancy) - {{:​32_talk-raissi.pdf|Knowledge Discovery guided by Domain Knowledge in the Big Data Era}} 
-      * 14:10 - K. Todorov (INRIA, Montpellier) - Bringing Together Heterogeneous Domain Ontologies via the Construction of a Common Fuzzy Knowledge Body+      * 14:10 - K. Todorov (INRIA, Montpellier) - {{:​33_talk-todorov.pdf|Bringing Together Heterogeneous Domain Ontologies via the Construction of a Common Fuzzy Knowledge Body}}
       * 14:40 - Coffee break       * 14:40 - Coffee break
-      * 15:00 - R. Choquet (APHP / INSERM Paris) - DebugIT: Ontology-mediated Data Integration for real-time Antibiotics Resistance Surveillance +      * 15:00 - R. Choquet (APHP / INSERM Paris) - {{:​34_debugit_credible_workshop_choquet.pdf|DebugIT: Ontology-mediated Data Integration for real-time Antibiotics Resistance Surveillance}} 
-      * 15:30 - S. Ferré (U. Rennes 1) - SEWELIS: Reconciling Expressive Querying and Exploratory Search +      * 15:30 - S. Ferré (U. Rennes 1) - {{:​35_talk-ferre-sewelis.pdf|SEWELIS: Reconciling Expressive Querying and Exploratory Search}} 
-      * 16:00 - P. Molli (U. Nantes) - Live Linked Data+      * 16:00 - P. Molli (U. Nantes) - {{:​36_credible2012-pmolli.pdf|Live Linked Data}}
       * 16:30 - Discussions       * 16:30 - Discussions
     * 17:00 - End of second day     * 17:00 - End of second day
   - **Wednesday,​ October 17**   - **Wednesday,​ October 17**
-    * 8:00 - [[atelier_15-17_octobre&#​semantic_workflows|Session 4: Semantic workflows]] (moderators:​ Alban Gaignard, Tristan Glatard) +    ​* **8:00 - [[atelier_15-17_octobre&#​semantic_workflows|Session 4: Semantic workflows]]** (moderators:​ Alban Gaignard, Tristan Glatard) 
-      * 8:00 - F. Lécué (IBM) - Composing and optimizing services in the Semantic Web +      * 8:00 - F. Lécué (IBM) - {{:​41_lecue-ibm-credible.pdf|Composing and optimizing services in the Semantic Web}} 
-      * 8:40 - P. Missier (Newcastle University) - Workflows, experimental findings, and their provenance: towards semantically rich linked data and method sharing for collaborative science +      * 8:40 - P. Missier (Newcastle University) - {{:​42_credible-missier.pdf|Workflows, experimental findings, and their provenance: towards semantically rich linked data and method sharing for collaborative science}} 
-      * 9:20 - A. Gaignard, N. Cerezo (I3S, Sophia Antipolis) - Semantic workflows: design and provenance+      * 9:20 - A. Gaignard, N. Cerezo (I3S, Sophia Antipolis) - {{:​43_credible-nadia-alban.pdf|Semantic workflows: design and provenance}}
       * 10:00 - Coffee break       * 10:00 - Coffee break
     * 10:30 - Conclusions     * 10:30 - Conclusions
atelier_15-17_octobre.1350457432.txt.gz · Last modified: 2012/10/17 09:03 by johan