Federating distributed and heterogeneous biomedical data and knowledge

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====== Publications related to the CrEDIBLE project ======
=== 2014 ===
  * B. Gibaud, G. Forestier, H. Benoit-Cattin, F. Cervenansky, P. Clarysse, D. Friboulet, A. Gaignard, P. Hugonnard, C. Lartizien, H. Liebgott, J. Montagnat, J. Tabary, T. Glatard. [[http://www.hal.inserm.fr/docs/01/06/23/71/PDF/ontovip-for-hal.pdf|OntoVIP: An ontology for the annotation of object models used for medical image simulation]], Journal of Biomedical Informatics (JBI), Elsevier, 2014, eISSN 1532-0480.
  * B. Batrancourt, M. Dojat, B. Gibaud and G. Kassel, [[http://www.hal.inserm.fr/inserm-01069670/document|A multilayer ontology of instruments for neurological, behavioral and cognitive assessments]], Neuroinformatics. September 2014. DOI: 10.1007/s12021-014-9244-3.
  * F. Michel, J. Montagnat, C. Faron-Zucker. [[https://hal.archives-ouvertes.fr/hal-00903568v2/document|A survey of RDB to RDF translation approaches and tools v2]] Research Report I3S, number I3S/RR 2013-04-FR, 24 pages, Sophia Antipolis, France, November 2014.
  * L. Djimenou. [[http://nyx.unice.fr/publis/djimenou:2014.pdf|Heterogeneous databases mediation]], Master thesis report. University of Nice Sophia Antipolis (France), August 2014.
  * A. Gaignard, J. Montagnat, B. Gibaud, G. Forestier, T. Glatard. [[https://hal.archives-ouvertes.fr/hal-01027596/document|Domain-specific summarisation of Life-Science e-experiments from provenance traces]], Journal of Web Semantics: Science, Services and Agents on the World Wide Web (JOWS), vol. 1, pages 17, July 2014.
  * B. Gibaud [[http://ncor.buffalo.edu/images/Bernard-Gibaud.ppt | Ontology of Imaging Datasets as a Prerequisite for Ontologies of Imaging Biomarkers]]. "Ontology and Imaging Informatics" Workshop organized by NCOR in Buffalo NY (USA), June 23-25.
  * S. Cipière, G. Erétéo, A. Gaignard, N. Boujelben, S. Gaspard, V. Breton, F. Cervenansky, D. R. C. Hill, T. Glatard, D. Manset, J. Montagnat, J. Revillard, L. Maigne. [[http://nyx.unice.fr/publis/cipiere-ereteo-etal:2014.pdf|Global Initiative for Sentinel e-Health Network on Grid (GINSENG): Medical Data Integration and Semantic Developments for Epidemiology]], Proceedings of the Proceedings of the CCGrid-Health workshop (CCGrid-Health'14), pages 755-763, IEEE, Chicago, USA, May 2014

=== 2013 ===
  * F. Michel, J. Montagnat, C. Faron-Zucker. [[http://hal.archives-ouvertes.fr/docs/00/90/35/68/PDF/Michel_Montagnat_Faron_2013_-_A_survey_of_RDB_to_RDF_translation_approaches_and_tools.pdf|A survey of RDB to RDF translation approaches and tools]], Research Report number I3S/RR 2013-04-FR, 25 pages, I3S laboratory, Sophia Antipolis, France, November 2013.
  * A. Gaignard. [[http://hal.archives-ouvertes.fr/tel-00827926/PDF|Distributed knowledge sharing and production through collaborative e-Science platforms]], Phd Thesis Université de Nice Sophia Antipolis, 254 pages, France, March 2013.

=== 2012 ===

  * O. Corby, A. Gaignard, C. Faron-Zucker, J. Montagnat. [[http://hal.archives-ouvertes.fr/docs/00/74/67/72/PDF/wi12.pdf|KGRAM Versatile Inference and Query Engine for the Web of Linked Data]], in Proceedings of the //IEEE/WIC/ACM International Conference on Web Intelligence// (WI'12), Macao, China, December 2012.
  * A. Gaignard, J. Montagnat, C. Faron-Zucker, O. Corby. [[http://hal.archives-ouvertes.fr/hal-00746765/PDF|Semantic Federation of Distributed Neurodata]], in Proceedings of the //MICCAI Workshop on Data- and Compute-Intensive Clinical and Translational Imaging Applications// (DCICTIA-MICCAI 2012), pages 41-50, Nice, France, October 2012.
  * B. Gibaud, {{:idash-bgibaud.pdf|Toward ontology-based federated systems for sharing medical images: lessons from the NeuroLOG experience}}, //iDash Image informatics Workshop//, University of California, San Diego, La Jolla (USA), September 29, 2012. (invited talk).