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--- atelier_15-17_octobre [2012/10/15 09:25] – [Draft agenda] johan
+++ atelier_15-17_octobre [2013/06/10 09:08] (current) – [Thematic working days, October 15-17, 2012] johan
@@ Line 1: / Line 1: @@
 ====== Thematic working days, October 15-17, 2012 ======
-Due to the increasing on-line availability of various biomedical data sources, the ability to federate heterogeneous and distributed data sources becomes critical to support multi-centric studies and translational research in medicine. The [[http://credible.i3s.unice.fr|CrEDIBLE project]] organizes 3 thematic working days in October 15-17 in Sophia Antipolis (France) where experts are invited to present their latest work and discuss their approaches. The aim is to gather scientists from all disciplines involved in the **set up of distributed and heterogeneous medical image data sharing systems**, to provide an overview of this broad and complex area, to assess the state-of-the-art methods and technologies addressing it, and to discuss the open scientific questions it raises.
+Due to the increasing on-line availability of various biomedical data sources, the ability to federate heterogeneous and distributed data sources becomes critical to support multi-centric studies and translational research in medicine. The [[http://credible.i3s.unice.fr|CrEDIBLE project]] organized 3 thematic working days in October 15-17 2012 in Sophia Antipolis (France) where experts were invited to present their latest work and discuss their approaches. The aim was to gather scientists from all disciplines involved in the **set up of distributed and heterogeneous medical image data sharing systems**, to provide an overview of this broad and complex area, to assess the state-of-the-art methods and technologies addressing it, and to discuss the open scientific questions it raises.
 The methods for biomedical data distribution considered in the context of CrEDIBLE are:
@@ Line 9: / Line 9: @@
   * **Data flow**: the use and the enrichment of the federated data stores through the use of data processing pipelines.
-==== Draft agenda ====
+==== Agenda ====
   - **Monday, October 15**
     * 12:00 - Lunch
-    * 14:00 - J. Montagnat (CNRS) - Welcome, CrEDIBLE project presentation, feedback from the NeuroLOG project
+    * 14:00 - J. Montagnat (CNRS) - Welcome, CrEDIBLE project presentation, {{:00_neurolog-credible_121015.pdf|feedback from the NeuroLOG project}}
-    * 14:30 - [[atelier_15-17_octobre&#data_integration|Session 1: Data integration methods and tools]] (moderators: Johan Montagnat, Olivier Corby)
+    * **14:30 - [[atelier_15-17_octobre&#data_integration|Session 1: Data integration methods and tools]]** (moderators: Johan Montagnat, Olivier Corby)
       * Medical data integration
-        * 14:30 - C. Daniel (APHP / INSERM, Paris) - Electronic Health Records for Clinical Research
+        * 14:30 - C. Daniel (APHP / INSERM, Paris) - {{:11_20121015_daniel_credible.pdf|Electronic Health Records for Clinical Research}}
-        * 15:10 - S. Murphy (Massachusetts General Hospital / Harvard Medical School) - Instrumenting the Health Care Enterprise for Discovery Research
+        * 15:10 - S. Murphy (Massachusetts General Hospital / Harvard Medical School) - {{:12_murphy_credible_10-15-2012.pdf|Instrumenting the Health Care Enterprise for Discovery Research}}
-    * 16:00 - coffee break
+      * 16:00 - coffee break
       * Data mediation
-        * 16:20 - O. Corcho (U. Polytechnic Madrid) - Distributed queries, data mediation
+        * 16:20 - O. Corcho (U. Polytechnic Madrid) - [[http://www.slideshare.net/ocorcho/data-integration-at-the-ontology-engineering-group|Distributed queries, data mediation]]
-        * 17:00 - P. Grenon (European Bioinformatics Institute) - Ontology based knowledge management of biomedical models and data
+        * 17:00 - P. Grenon (European Bioinformatics Institute) - {{:14_credible-grenon-1.pdf|Ontology based knowledge management of biomedical models and data}}
-        * 17:20 - O. Corby (INRIA, Sophia Antipolis) - KGRAM abstract machine for knowledge data management
+        * 17:20 - O. Corby (INRIA, Sophia Antipolis) - {{:15_corby-kgram.pdf|KGRAM abstract machine for knowledge data management}}
-    * 17:40 - Discussions
+      * 17:40 - Discussions
-    * 18:20 - End of first day
+    * 18:30 - End of first day
     * 19:30 - Diner
   - **Tuesday, October 16**
-    * 8:00 - [[atelier_15-17_octobre&#ontologies|Session 2: Ontologies, semantic modeling]] (moderators: Bernard Gibaud, Gilles Kassel)
+    * **8:00 - [[atelier_15-17_octobre&#ontologies|Session 2: Ontologies, semantic modeling]]** (moderators: Bernard Gibaud, Gilles Kassel)
-      * C. Masolo (Laboratory for Applied Ontology, Trento) - DOLCE extensions
+      * 8:00 - C. Masolo (Laboratory for Applied Ontology, Trento) - {{:21_masolo-credible.pdf|DOLCE extensions}}
-      * G. Gkoutos (U. Cambridge) - From Systems Genetics to Translational Medicine
+      * 9:00 - G. Gkoutos (U. Cambridge) - {{:22_gkoutos.pdf|From Systems Genetics to Translational Medicine}}
-      * 10:00 coffee break
+      * 9:40 - Coffee break
-      * J. Charlet (APHP / INSERM, Paris) - Relations between Ontologies and Knowledge Structure: Two Case Study
+      * 10:00 - J. Charlet (APHP / INSERM, Paris) - {{:23_charlet-credible2012.pdf|Relations between Ontologies and Knowledge Structure: Two Case Study}}
-      * P. Grenon (European Bioinformatics Institute) - Ontology for biomedical models and data
+      * 10:40 - P. Grenon (European Bioinformatics Institute) - {{:24_credible-grenon-2.pdf|Ontology for biomedical models and data}}
-      * B. Batrancourt (APHP / INSERM, Paris) - Ontology reuse, from NeuroLOG to CATI
+      * 11:10 - B. Batrancourt (APHP / INSERM, Paris) - {{:25_credible_batrancourt.pdf|Ontology reuse, from NeuroLOG to CATI}}
     * 12:00 - Lunch
-    * 13:00 - [[atelier_15-17_octobre&#data_representation_models_and_reasoning|Session 3: Data representation model and reasoning]] (moderators: Catherine Faron-Zucker, Olivier Corby)
+    * **13:00 - [[atelier_15-17_octobre&#data_representation_models_and_reasoning|Session 3: Data representation model and reasoning]]** (moderators: Catherine Faron-Zucker, Olivier Corby)
-      * M.-A. Aufaure (Ecole Centrale de Paris) - Crunch and Manage Graph Data: the survival kit
+      * 13:00 - M.-A. Aufaure (Ecole Centrale de Paris) - {{:31_seminaire-credible-aufaure.pdf|Crunch and Manage Graph Data: the survival kit}}
-      * C. Raissi (INRIA, Nancy) - Knowledge Discovery guided by Domain Knowledge in the Big Data Era
+      * 13:30 - C. Raissi (INRIA, Nancy) - {{:32_talk-raissi.pdf|Knowledge Discovery guided by Domain Knowledge in the Big Data Era}}
-      * K. Todorov (INRIA, Montpellier) - Bringing Together Heterogeneous Domain Ontologies via the Construction of a Common Fuzzy Knowledge Body
+      * 14:10 - K. Todorov (INRIA, Montpellier) - {{:33_talk-todorov.pdf|Bringing Together Heterogeneous Domain Ontologies via the Construction of a Common Fuzzy Knowledge Body}}
-      * 15:00 coffee break
+      * 14:40 - Coffee break
-      * R. Choquet (APHP / INSERM Paris) - DebugIT: Ontology-mediated Data Integration for real-time Antibiotics Resistance Surveillance
+      * 15:00 - R. Choquet (APHP / INSERM Paris) - {{:34_debugit_credible_workshop_choquet.pdf|DebugIT: Ontology-mediated Data Integration for real-time Antibiotics Resistance Surveillance}}
-      * S. Ferré (U. Rennes 1) - SEWELIS: Reconciling Expressive Querying and Exploratory Search
+      * 15:30 - S. Ferré (U. Rennes 1) - {{:35_talk-ferre-sewelis.pdf|SEWELIS: Reconciling Expressive Querying and Exploratory Search}}
-      * P. Molli (U. Nantes) - Live Linked Data
+      * 16:00 - P. Molli (U. Nantes) - {{:36_credible2012-pmolli.pdf|Live Linked Data}}
+      * 16:30 - Discussions
     * 17:00 - End of second day
   - **Wednesday, October 17**
-    * 8:00 - [[atelier_15-17_octobre&#semantic_workflows|Session 4: Semantic workflows]] (moderators: Alban Gaignard, Tristan Glatard)
+    * **8:00 - [[atelier_15-17_octobre&#semantic_workflows|Session 4: Semantic workflows]]** (moderators: Alban Gaignard, Tristan Glatard)
-      * F. Lécué (IBM) - Composing and optimizing services in the Semantic Web
+      * 8:00 - F. Lécué (IBM) - {{:41_lecue-ibm-credible.pdf|Composing and optimizing services in the Semantic Web}}
-      * P. Missier (Newcastle University) - Workflows, experimental findings, and their provenance: towards semantically rich linked data and method sharing for collaborative science
+      * 8:40 - P. Missier (Newcastle University) - {{:42_credible-missier.pdf|Workflows, experimental findings, and their provenance: towards semantically rich linked data and method sharing for collaborative science}}
-      * A. Gaignard, N. Cerezo (I3S, Sophia Antipolis) - Semantic workflows: design and provenance
+      * 9:20 - A. Gaignard, N. Cerezo (I3S, Sophia Antipolis) - {{:43_credible-nadia-alban.pdf|Semantic workflows: design and provenance}}
-    * 10:00 Coffee break
+      * 10:00 - Coffee break
     * 10:30 - Conclusions
     * 12:00 - End of workshop, Lunch